For this game, mods have no requirement to be compatible with each other, leaving that to users to figure out.
When you're running as many different mods as you are, problems are likely.
One way you could sort it out is to create a small new test world with no mods, and confirm that everything works as expected.
LGSM will let you do this without disturbing your original world.
Then add in half your mods and see if you have the problem. If so, you've narrowed it down to one or more of those mods.
Repeat as necessary until you find the problem. Or you could add one at a time until you get the problem.