@dad22221 @weezman @Bass_junke
I seem to have found the fix to the disappearing ammo issue. You will simply have to rename the folders:
TacticalWeapons -> ZZZTacticalWeapons
TacticalWeaponsSMX -> ZZZTacticalWeaponsSMX
It needs to be lower than the SMX folders in Alphabetical order and it should fix your ammo, you will even find any ammo that may have disappeared as well.